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Machine learning in the prediction of cancer therapy JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal |
New insights into the acetate uptake transporter (AceTr) family: Unveiling amino acid residues critical for specificity and activity JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal |
Modeling a co-culture of Clostridium autoethanogenum and Clostridium kluyveri to increase syngas conversion to medium-chain fatty-acids JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal |
The impact of pathogenic and artificial mutations on Claudin-5 selectivity from molecular dynamics simulations JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal |
Nanomechanics combined with HDX reveals allosteric drug binding sites of CFTR NBD1 JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal |
AutoVEM2: A flexible automated tool to analyze candidate key mutations and epidemic trends for virus JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal |
A rapid CRISPR competitive assay for in vitro and in vivo discovery of potential drug targets affecting the hematopoietic system JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal |
Modelling of SHMT1 riboregulation predicts dynamic changes of serine and glycine levels across cellular compartments JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal Research funded by Sapienza Università di Roma (GA116154C8A94E3D,RG11816430AF48E1,RM11715C646D693E,RM11916B46D48441,RM120172A7AD98EB) | Associazione Italiana per la Ricerca sul Cancro (IG2019-ID23125) | Horizon 2020 Framework Programme (IASIS 727658,INFORE 25080) | European Research Council (ASTRA 855923,RIBOMYLOME 309545) | Ministerio de Economía y Competitividad (BFU2017-86970-P) |
Computational design of SARS-CoV-2 spike glycoproteins to increase immunogenicity by T cell epitope engineering JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal Research funded by National Science Foundation (DBI2030790,IIS1901191) | National Institute of General Medical Sciences (GM136422,S10OD026825) | National Institute of Allergy and Infectious Diseases (AI081062,AI134678) |
Co-evolutionary landscape at the interface and non-interface regions of protein-protein interaction complexes JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal Research funded by Department of Science and Technology, Ministry of Science and Technology, India (GAP362) | Council of Scientific and Industrial Research, India (GAP362) | CSIR-Indian Institute of Chemical Biology (GAP362) |
D155Y substitution of SARS-CoV-2 ORF3a weakens binding with Caveolin-1 JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal |
Analysis of immune subtypes across the epithelial-mesenchymal plasticity spectrum JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal Research funded by US Department of Defense Prostate Cancer Research Program (W81XWH-18-1-0189) | Department of Science and Technology, Ministry of Science and Technology, India (SB/S2/RJN-049/2018) | National Cancer Institute (1R01CA233585-02) |
Cross-talk between Hippo and Wnt signalling pathways in intestinal crypts: Insights from an agent-based model JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal Research funded by Medical Research Council (MR/N021444/1) | Engineering and Physical Sciences Research Council (EP/R041695/1,EP/S01876X/1) | European Commission (766840) |
Unraveling membrane properties at the organelle-level with LipidDyn JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal |
MOSGA 2: Comparative genomics and validation tools JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal |
Protein structure aids predicting functional perturbation of missense variants in SCN5A and KCNQ1 JOURNAL ARTICLE published 2019 in Computational and Structural Biotechnology Journal Research funded by National Institutes of Health (K99HL135442,R35GM127087,HL122010,P50GM115305) |
A drug repurposing method based on inhibition effect on gene regulatory network JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal |
Method development for cross-study microbiome data mining: Challenges and opportunities JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal |
Mitotic chromosome organization: General rules meet species-specific variability JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal |
Epigenetic modifications: Allusive clues of lncRNA functions in plants JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal |