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Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response JOURNAL ARTICLE published 20 October 2015 in PLOS Computational Biology |
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Asymmetric Switching in a Homodimeric ABC Transporter: A Simulation Study JOURNAL ARTICLE published 29 April 2010 in PLoS Computational Biology |
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Benchmarking of tools for axon length measurement in individually-labeled projection neurons JOURNAL ARTICLE published 8 December 2021 in PLOS Computational Biology Research funded by European Union’s Horizon 2020 Research and Innovation Program (945539) | Ministerio de Ciencia e Innovación de España (PCI2019-111900-2) | Ministerio de Ciencia e Innovación de España (BFU2017-88549) | Fundación Bancaria “la Caixa” (100010434) |
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A method for achieving complete microbial genomes and improving bins from metagenomics data JOURNAL ARTICLE published 7 May 2021 in PLOS Computational Biology Research funded by Joint Genome Institute (DE-AC02-05CH11231) | National Energy Research Scientific Computing Center (DE-AC02-05CH11231) | U.S. Department of Energy Office of Science User Facilities (DE-AC02-05CH11231) |
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Inferring tumor progression in large datasets JOURNAL ARTICLE published 9 October 2020 in PLOS Computational Biology |
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Poisson balanced spiking networks JOURNAL ARTICLE published 20 November 2020 in PLOS Computational Biology |
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In silico Experimentation of Glioma Microenvironment Development and Anti-tumor Therapy JOURNAL ARTICLE published 2 February 2012 in PLoS Computational Biology |
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The Computational Development of Reinforcement Learning during Adolescence JOURNAL ARTICLE published 20 June 2016 in PLOS Computational Biology Research funded by Marie Sklodowska-Curie Individual European Fellowship (PIEF-GA-2012 Grant 328822) | European Research Council (ERC Consolidator Grant 617629) |
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Modeling microbial metabolic trade-offs in a chemostat JOURNAL ARTICLE published 28 August 2020 in PLOS Computational Biology Research funded by National Institutes of Health (R01GM082938) | National Science Foundation (PHY-1734030) |
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Identifying influential neighbors in animal flocking JOURNAL ARTICLE published 21 November 2017 in PLOS Computational Biology Research funded by China Scholarship Council (CN) (201506040167) | Engineering and Physical Sciences Research Council (EP/I013717/1) | H2020 Marie Skłodowska-Curie Actions (655235) | National Natural Science Foundation of China (61374165) | National Natural Science Foundation of China (CN) (31261160495) | University Paul Sabatier (Projet Dynabanc) |
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The Dynamics of Naturally Acquired Immunity to Plasmodium falciparum Infection JOURNAL ARTICLE published 18 October 2012 in PLoS Computational Biology |
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Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing JOURNAL ARTICLE published 25 April 2013 in PLoS Computational Biology |
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Indirect reciprocity with stochastic and dual reputation updates JOURNAL ARTICLE published 20 July 2023 in PLOS Computational Biology Research funded by Japan Society for the Promotion of Science (JSPS KAKENHI; Grant no. 21K03362) | Japan Society for the Promotion of Science (JSPS KAKENHI; Grant no. 21KK0247) | Japan Society for the Promotion of Science (JSPS KAKENHI; Grant no. 22H00815) | H2020 European Research Council (Starting Grant 525 850529: E-DIRECT) |
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Metabolic reprogramming dynamics in tumor spheroids: Insights from a multicellular, multiscale model JOURNAL ARTICLE published 11 June 2019 in PLOS Computational Biology |
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mbkmeans: Fast clustering for single cell data using mini-batch k-means JOURNAL ARTICLE published 26 January 2021 in PLOS Computational Biology Research funded by National Institutes of Health (R00HG009007) | National Institutes of Health (U19MH114830) | Chan Zuckerberg Initiative DAF (DAF2018-183201) | Chan Zuckerberg Initiative DAF (DAF2018-183201) | Chan Zuckerberg Initiative DAF (DAF2018-183201) | Chan Zuckerberg Initiative DAF (DAF2018-183201) | Chan Zuckerberg Initiative DAF (DAF2018-183201) | Chan Zuckerberg Initiative DAF (CZF2019-002443) | Chan Zuckerberg Initiative DAF (CZF2019-002443) | Chan Zuckerberg Initiative DAF (CZF2019-002443) | Ministero dell’Istruzione, dell’Università e della Ricerca (Programma per Giovani Ricercatori Rita Levi Montalcini) |
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Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models JOURNAL ARTICLE published 21 December 2023 in PLOS Computational Biology Research funded by Deutsche Forschungsgemeinschaft (EXC 2124) | Deutsche Forschungsgemeinschaft (EXC 2064_1) |
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Population coding strategies in human tactile afferents JOURNAL ARTICLE published 7 December 2022 in PLOS Computational Biology Research funded by Horizon 2020 Framework Programme (813713) | Horizon 2020 Framework Programme (813713) |
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CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data JOURNAL ARTICLE published 13 October 2022 in PLOS Computational Biology Research funded by National Science Foundation (1746047) | Division of Computing and Communication Foundations (1850502) | Division of Computing and Communication Foundations (2046488) | Rosetrees Trust (M917) |
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Normalization by orientation-tuned surround in human V1-V3 JOURNAL ARTICLE published 27 December 2023 in PLOS Computational Biology Research funded by National Eye Institute of the National Institutes of Health (R01 EY027401) | Natiional Institute of Mental Health of the National Institutes of Health (R01 MH111417) |
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Harnessing the flexibility of neural networks to predict dynamic theoretical parameters underlying human choice behavior JOURNAL ARTICLE published 4 January 2024 in PLOS Computational Biology Research funded by Israel Science Foundation (2536/20) | Tel Aviv University Center for AI and Data Science (TAD) | the Israeli Science Foundation (2923/20) |