Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells

JOURNAL ARTICLE published 13 September 2022 in PLOS Computational Biology

Research funded by Academy of Finland (330776,336376) | Norges Forskningsråd (248828) | Livsvitenskap, Universitetet i Oslo (4MENT)

Authors: Tuomo Mäki-Marttunen | Verónica Mäki-Marttunen

Editors: Joanna Jędrzejewska-Szmek

Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines

JOURNAL ARTICLE published 2 March 2020 in PLOS Computational Biology

Authors: Elba Raimúndez | Simone Keller | Gwen Zwingenberger | Karolin Ebert | Sabine Hug | Fabian J. Theis | Dieter Maier | Birgit Luber | Jan Hasenauer

Editors: James Gallo

Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn

JOURNAL ARTICLE published 18 March 2024 in PLOS Computational Biology

Research funded by Institut de Valorisation des Données (PRF3) | Consortium canadien en neurodégénérescence associée au vieillissement (Team 9 “discovering new biomarkers”) | Courtois Foundation (Neuromod) | Institut national de recherche en informatique et en automatique (Neuromind) | Institut de Valorisation des Données (postdoctoral research funding) | Institut de Valorisation des Données (postdoctoral research funding) | National Institute on Deafness and Other Communication Disorders (5T32DC000038) | Foundation for the National Institutes of Health (5R24MH117179) | Courtois Foundation (Neuromod)

Authors: Hao-Ting Wang | Steven L. Meisler | Hanad Sharmarke | Natasha Clarke | Nicolas Gensollen | Christopher J. Markiewicz | François Paugam | Bertrand Thirion | Pierre Bellec

Editors: Catie Chang

Coexistence of Lateral and Co-Tuned Inhibitory Configurations in Cortical Networks

JOURNAL ARTICLE published 6 October 2011 in PLoS Computational Biology

Authors: Robert B. Levy | Alex D. Reyes

Editors: Olaf Sporns

The role of intracellular signaling in the stripe formation in engineered Escherichia coli populations

JOURNAL ARTICLE published 4 June 2018 in PLOS Computational Biology

Research funded by Research Grants Council, University Grants Committee (202713) | Division of Mathematical Sciences (DMS 1312966) | NSFC (91330203) | Division of Institution and Award Support (1553637)

Authors: Xiaoru Xue | Chuan Xue | Min Tang

Editors: Kevin Painter

Identifying parameter regions for multistationarity

JOURNAL ARTICLE published 3 October 2017 in PLOS Computational Biology

Authors: Carsten Conradi | Elisenda Feliu | Maya Mincheva | Carsten Wiuf

Editors: Philip K Maini

Neuronal Firing Sensitivity to Morphologic and Active Membrane Parameters

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Christina M Weaver | Susan Wearne

How to Grow a Computational Biology Lab

JOURNAL ARTICLE published 24 September 2015 in PLOS Computational Biology

Authors: Alice Carolyn McHardy

Editors: Theodore Alexandrov

“Simple Rules for Editors”? Here Is One Rule to Tackle Neglected Problems of Publishing: Response from PLoS

JOURNAL ARTICLE published 2007 in PLoS Computational Biology

Authors: Mark Patterson | Barbara Cohen

Correction: Random Wiring, Ganglion Cell Mosaics, and the Functional Architecture of the Visual Cortex

JOURNAL ARTICLE published 3 February 2016 in PLOS Computational Biology

Authors: The PLOS Computational Biology Staff

Chemotaxis Receptor Complexes: From Signaling to Assembly

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Robert Guenter Endres | Joseph Falke | Ned S. Wingreen

ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data

JOURNAL ARTICLE published 16 March 2020 in PLOS Computational Biology

Research funded by Biological and Environmental Research (DE-AC05-76RL01830)

Authors: Lisa M. Bramer | Amanda M. White | Kelly G. Stratton | Allison M. Thompson | Daniel Claborne | Kirsten Hofmockel | Lee Ann McCue

Editors: Dina Schneidman-Duhovny

Classifying dynamic transitions in high dimensional neural mass models: A random forest approach

JOURNAL ARTICLE published 2 March 2018 in PLOS Computational Biology

Authors: Lauric A. Ferrat | Marc Goodfellow | John R. Terry

Editors: Levin Kuhlmann

Angiogenesis: An Adaptive Dynamic Biological Patterning Problem

JOURNAL ARTICLE published 21 March 2013 in PLoS Computational Biology

Authors: Timothy W. Secomb | Jonathan P. Alberding | Richard Hsu | Mark W. Dewhirst | Axel R. Pries

Editors: Charles D. Little

Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps)

JOURNAL ARTICLE published 15 December 2011 in PLoS Computational Biology

Authors: Zhichao Liu | Qiang Shi | Don Ding | Reagan Kelly | Hong Fang | Weida Tong

Editors: Greg Tucker-Kellogg

Binding Leverage as a Molecular Basis for Allosteric Regulation

JOURNAL ARTICLE published 15 September 2011 in PLoS Computational Biology

Authors: Simon Mitternacht | Igor N. Berezovsky

Editors: Thomas Lengauer

Multi-state design of flexible proteins predicts sequences optimal for conformational change

JOURNAL ARTICLE published 7 February 2020 in PLOS Computational Biology

Research funded by Foundation for the National Institutes of Health (U19 AI117905)

Authors: Marion F. Sauer | Alexander M. Sevy | James E. Crowe | Jens Meiler

Editors: Björn Wallner

Protein Interaction Networks—More Than Mere Modules

JOURNAL ARTICLE published 29 January 2010 in PLoS Computational Biology

Authors: Stefan Pinkert | Jörg Schultz | Jörg Reichardt

Editors: Eytan Domany

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains

JOURNAL ARTICLE published 12 February 2018 in PLOS Computational Biology

Research funded by National Institute for Blood Transfusion (INTS, France), Institute for Health and Medical Research (INSERM, France), Laboratory of Excellence GR-Ex (ANR-11- LABX-0051) | The labex GR-Ex is funded by the program Investissements d’avenir of the French National Research Agency, (ANR-11-IDEX-0005-02) | Indo-French Centre for the Promotion of Advanced Research/CEFIPRA for a collaborative grant (5302-2) | Indo-French Centre for the Promotion of Advanced Research/CEFIPRA for a collaborative grant (5302-2)

Authors: Sneha Vishwanath | Alexandre G. de Brevern | Narayanaswamy Srinivasan

Editors: Donald Jacobs

An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer

JOURNAL ARTICLE published 15 January 2010 in PLoS Computational Biology

Authors: Rod K. Nibbe | Mehmet Koyutürk | Mark R. Chance

Editors: Nathan D. Price