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Showing results for ISSN matching 1748-7188

Fast calculation of the quartet distance between trees of arbitrary degrees

JOURNAL ARTICLE published December 2006 in Algorithms for Molecular Biology

Authors: Chris Christiansen | Thomas Mailund | Christian NS Pedersen | Martin Randers | Martin Stig Stissing

https://doi.org/10.1186/1748-7188-1-16 Actions

Linear-time algorithms for phylogenetic tree completion under Robinson–Foulds distance

JOURNAL ARTICLE published December 2020 in Algorithms for Molecular Biology

Research funded by National Science Foundation (IIS 1553421,MCB 1616514)

Authors: Mukul S. Bansal

https://doi.org/10.1186/s13015-020-00166-1 Actions

HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing

JOURNAL ARTICLE published December 2017 in Algorithms for Molecular Biology

Research funded by National Natural Science Foundation of China (CN) (61771331)

Authors: Shixiang Wan | Quan Zou

https://doi.org/10.1186/s13015-017-0116-x Actions

Testing the agreement of trees with internal labels

JOURNAL ARTICLE published December 2021 in Algorithms for Molecular Biology

Authors: David Fernández-Baca | Lei Liu

https://doi.org/10.1186/s13015-021-00201-9 Actions

Weighted ASTRID: fast and accurate species trees from weighted internode distances

JOURNAL ARTICLE published 19 July 2023 in Algorithms for Molecular Biology

Authors: Baqiao Liu | Tandy Warnow

https://doi.org/10.1186/s13015-023-00230-6 Actions

Adding hydrogen atoms to molecular models via fragment superimposition

JOURNAL ARTICLE published December 2022 in Algorithms for Molecular Biology

Authors: Patrick Kunzmann | Jacob Marcel Anter | Kay Hamacher

https://doi.org/10.1186/s13015-022-00215-x Actions

Breaking the hierarchy - a new cluster selection mechanism for hierarchical clustering methods

JOURNAL ARTICLE published December 2009 in Algorithms for Molecular Biology

Authors: László A Zahoránszky | Gyula Y Katona | Péter Hári | András Málnási-Csizmadia | Katharina A Zweig | Gergely Zahoránszky-Köhalmi

https://doi.org/10.1186/1748-7188-4-12 Actions

Instability in progressive multiple sequence alignment algorithms

JOURNAL ARTICLE published December 2015 in Algorithms for Molecular Biology

Research funded by Science Foundation Ireland (IE) (11/PI/1034)

Authors: Kieran Boyce | Fabian Sievers | Desmond G. Higgins

https://doi.org/10.1186/s13015-015-0057-1 Actions

On the use of cartographic projections in visualizing phylo-genetic tree space

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Kenneth Sundberg | Mark Clement | Quinn Snell

https://doi.org/10.1186/1748-7188-5-26 Actions

Pfp-fm: an accelerated FM-index

JOURNAL ARTICLE published 10 April 2024 in Algorithms for Molecular Biology

Research funded by National Human Genome Research Institute,United States (R01HG011392) | National Science Foundation, United States (DBI2029552) | Japan Society for the Promotion of Science (JP21K17701) | Japan Society for the Promotion of Science,Japan (JP22H03551,JP20H04141) | National Human Genome Research Institute (R01AI14180) | Natural Sciences and Engineering Research Council of Canada (RGPIN071852020)

Authors: Aaron Hong | Marco Oliva | Dominik Köppl | Hideo Bannai | Christina Boucher | Travis Gagie

https://doi.org/10.1186/s13015-024-00260-8 Actions

Atom mapping with constraint programming

JOURNAL ARTICLE published December 2014 in Algorithms for Molecular Biology

Authors: Martin Mann | Feras Nahar | Norah Schnorr | Rolf Backofen | Peter F Stadler | Christoph Flamm

https://doi.org/10.1186/s13015-014-0023-3 Actions

Algorithms for detecting and analysing autocatalytic sets

JOURNAL ARTICLE published December 2015 in Algorithms for Molecular Biology

Authors: Wim Hordijk | Joshua I Smith | Mike Steel

https://doi.org/10.1186/s13015-015-0042-8 Actions

Predicting direct protein interactions from affinity purification mass spectrometry data

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Ethan DH Kim | Ashish Sabharwal | Adrian R Vetta | Mathieu Blanchette

https://doi.org/10.1186/1748-7188-5-34 Actions

Back-translation for discovering distant protein homologies in the presence of frameshift mutations

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Marta Gîrdea | Laurent Noé | Gregory Kucherov

https://doi.org/10.1186/1748-7188-5-6 Actions

WildSpan: mining structured motifs from protein sequences

JOURNAL ARTICLE published December 2011 in Algorithms for Molecular Biology

Authors: Chen-Ming Hsu | Chien-Yu Chen | Baw-Jhiune Liu

https://doi.org/10.1186/1748-7188-6-6 Actions

Linear time minimum segmentation enables scalable founder reconstruction

JOURNAL ARTICLE published December 2019 in Algorithms for Molecular Biology

Research funded by Luonnontieteiden ja Tekniikan Tutkimuksen Toimikunta (309048)

Authors: Tuukka Norri | Bastien Cazaux | Dmitry Kosolobov | Veli Mäkinen

https://doi.org/10.1186/s13015-019-0147-6 Actions

phyBWT2: phylogeny reconstruction via eBWT positional clustering

JOURNAL ARTICLE published 3 August 2023 in Algorithms for Molecular Biology

Research funded by European Commission (ECS00000017) | Ministero dell’Istruzione, dell’Università e della Ricerca (20174LF3T8)

Authors: Veronica Guerrini | Alessio Conte | Roberto Grossi | Gianni Liti | Giovanna Rosone | Lorenzo Tattini

https://doi.org/10.1186/s13015-023-00232-4 Actions

Global exact optimisations for chloroplast structural haplotype scaffolding

JOURNAL ARTICLE published 6 February 2024 in Algorithms for Molecular Biology

Authors: Victor Epain | Rumen Andonov

https://doi.org/10.1186/s13015-023-00243-1 Actions

Evolving DNA motifs to predict GeneChip probe performance

JOURNAL ARTICLE published December 2009 in Algorithms for Molecular Biology

Authors: WB Langdon | AP Harrison

https://doi.org/10.1186/1748-7188-4-6 Actions

gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections

JOURNAL ARTICLE published December 2020 in Algorithms for Molecular Biology

Research funded by Ministero dell’Istruzione, dell’Università e della Ricerca (RBSI146R5L)

Authors: Felipe A. Louza | Guilherme P. Telles | Simon Gog | Nicola Prezza | Giovanna Rosone

https://doi.org/10.1186/s13015-020-00177-y Actions
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