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New journal: Algorithms for Molecular Biology JOURNAL ARTICLE published January 2006 in Algorithms for Molecular Biology |
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Outlier detection in BLAST hits JOURNAL ARTICLE published December 2018 in Algorithms for Molecular Biology Research funded by National Science Foundation (IIS-1513615) |
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Locality-sensitive bucketing functions for the edit distance JOURNAL ARTICLE published 24 July 2023 in Algorithms for Molecular Biology Research funded by US National Science Foundation (DBI-2019797) | US National Institutes of Health (R01HG011065) |
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Unifying duplication episode clustering and gene-species mapping inference JOURNAL ARTICLE published 14 February 2024 in Algorithms for Molecular Biology Research funded by National Science Centre, Poland (#2017/27/B/ST6/02720) |
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Space-efficient representation of genomic k-mer count tables JOURNAL ARTICLE published December 2022 in Algorithms for Molecular Biology |
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Alignment- and reference-free phylogenomics with colored de Bruijn graphs JOURNAL ARTICLE published December 2020 in Algorithms for Molecular Biology |
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On the number of genomic pacemakers: a geometric approach JOURNAL ARTICLE published January 2014 in Algorithms for Molecular Biology |
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A multiobjective approach for identifying protein complexes and studying their association in multiple disorders JOURNAL ARTICLE published December 2015 in Algorithms for Molecular Biology |
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Approximating the DCJ distance of balanced genomes in linear time JOURNAL ARTICLE published December 2017 in Algorithms for Molecular Biology |
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Finding local genome rearrangements JOURNAL ARTICLE published December 2018 in Algorithms for Molecular Biology Research funded by CNRS (Ozes L’Interdisciplinarite) |
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Sorting signed permutations by short operations JOURNAL ARTICLE published December 2015 in Algorithms for Molecular Biology |
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A new 1.375-approximation algorithm for sorting by transpositions JOURNAL ARTICLE published December 2022 in Algorithms for Molecular Biology Research funded by Conselho Nacional de Desenvolvimento Científico e Tecnológico (310785/2018-9) | Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (88887.639024/2014-01) |
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Efficient edit distance with duplications and contractions JOURNAL ARTICLE published December 2013 in Algorithms for Molecular Biology |
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A simple, practical and complete O -time Algorithm for RNA folding using the Four-Russians Speedup JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology |
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MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics JOURNAL ARTICLE published December 2016 in Algorithms for Molecular Biology Research funded by Ministero dell’Istruzione, dell’Università e della Ricerca (PRIN 20122F87B2) |
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Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model JOURNAL ARTICLE published 1 December 2023 in Algorithms for Molecular Biology |
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Fast characterization of segmental duplication structure in multiple genome assemblies JOURNAL ARTICLE published December 2022 in Algorithms for Molecular Biology Research funded by Natural Sciences and Engineering Research Council of Canada (RGPIN-04973,RGPIN-05952) | Canada Foundation for Innovation (CRC-JELF) |
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Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps JOURNAL ARTICLE published December 2008 in Algorithms for Molecular Biology |
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On the group theoretical background of assigning stepwise mutations onto phylogenies JOURNAL ARTICLE published December 2012 in Algorithms for Molecular Biology |
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NANUQ: a method for inferring species networks from gene trees under the coalescent model JOURNAL ARTICLE published December 2019 in Algorithms for Molecular Biology Research funded by National Institutes of Health (R01 GM117590) |