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Showing results for ISSN matching 1748-7188

The feasibility of genome-scale biological network inference using Graphics Processing Units

JOURNAL ARTICLE published December 2017 in Algorithms for Molecular Biology

Authors: Raghuram Thiagarajan | Amir Alavi | Jagdeep T. Podichetty | Jason N. Bazil | Daniel A. Beard

https://doi.org/10.1186/s13015-017-0100-5 Actions

Challenges in experimental data integration within genome-scale metabolic models

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Pierre-Yves Bourguignon | Areejit Samal | François Képès | Jürgen Jost | Olivier C Martin

https://doi.org/10.1186/1748-7188-5-20 Actions

Constructing majority-rule supertrees

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Jianrong Dong | David Fernández-Baca | FR McMorris

https://doi.org/10.1186/1748-7188-5-2 Actions

On the protein folding problem in 2D-triangular lattices

JOURNAL ARTICLE published January 2013 in Algorithms for Molecular Biology

Authors: Abu Sayed Md Sohidull Islam | Mohammad Sohel Rahman

https://doi.org/10.1186/1748-7188-8-30 Actions

Derivative-free neural network for optimizing the scoring functions associated with dynamic programming of pairwise-profile alignment

JOURNAL ARTICLE published December 2018 in Algorithms for Molecular Biology

Authors: Kazunori D. Yamada

https://doi.org/10.1186/s13015-018-0123-6 Actions

Using cascading Bloom filters to improve the memory usage for de Brujin graphs

JOURNAL ARTICLE published January 2014 in Algorithms for Molecular Biology

Authors: Kamil Salikhov | Gustavo Sacomoto | Gregory Kucherov

https://doi.org/10.1186/1748-7188-9-2 Actions

Haplotypes versus genotypes on pedigrees

JOURNAL ARTICLE published December 2011 in Algorithms for Molecular Biology

Authors: Bonnie B Kirkpatrick

https://doi.org/10.1186/1748-7188-6-10 Actions

A markov classification model for metabolic pathways

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Timothy Hancock | Hiroshi Mamitsuka

https://doi.org/10.1186/1748-7188-5-10 Actions

Enumerating all maximal frequent subtrees in collections of phylogenetic trees

JOURNAL ARTICLE published December 2014 in Algorithms for Molecular Biology

Authors: Akshay Deepak | David Fernández-Baca

https://doi.org/10.1186/1748-7188-9-16 Actions

A simulation study comparing supertree and combined analysis methods using SMIDGen

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: M Shel Swenson | François Barbançon | Tandy Warnow | C Randal Linder

https://doi.org/10.1186/1748-7188-5-8 Actions

An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem

JOURNAL ARTICLE published December 2016 in Algorithms for Molecular Biology

Authors: Songjian Lu | Gunasheil Mandava | Gaibo Yan | Xinghua Lu

https://doi.org/10.1186/s13015-016-0073-9 Actions

A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data

JOURNAL ARTICLE published December 2009 in Algorithms for Molecular Biology

Authors: Sahely Bhadra | Chiranjib Bhattacharyya | Nagasuma R Chandra | I Saira Mian

https://doi.org/10.1186/1748-7188-4-5 Actions

Mining, compressing and classifying with extensible motifs

JOURNAL ARTICLE published December 2006 in Algorithms for Molecular Biology

Authors: Alberto Apostolico | Matteo Comin | Laxmi Parida

https://doi.org/10.1186/1748-7188-1-4 Actions

A representation of a compressed de Bruijn graph for pan-genome analysis that enables search

JOURNAL ARTICLE published December 2016 in Algorithms for Molecular Biology

Research funded by Deutsche Forschungsgemeinschaft (OH 53/6-2)

Authors: Timo Beller | Enno Ohlebusch

https://doi.org/10.1186/s13015-016-0083-7 Actions

Computing distribution of scale independent motifs in biological sequences

JOURNAL ARTICLE published December 2006 in Algorithms for Molecular Biology

Authors: Jonas S Almeida | Susana Vinga

https://doi.org/10.1186/1748-7188-1-18 Actions

On the family-free DCJ distance and similarity

JOURNAL ARTICLE published December 2015 in Algorithms for Molecular Biology

Authors: Fábio V Martinez | Pedro Feijão | Marília DV Braga | Jens Stoye

https://doi.org/10.1186/s13015-015-0041-9 Actions

Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem

JOURNAL ARTICLE published December 2016 in Algorithms for Molecular Biology

Authors: Benjamin Drinkwater | Michael A. Charleston

https://doi.org/10.1186/s13015-016-0077-5 Actions

Phylogenetic comparative assembly

JOURNAL ARTICLE published December 2010 in Algorithms for Molecular Biology

Authors: Peter Husemann | Jens Stoye

https://doi.org/10.1186/1748-7188-5-3 Actions

An efficient algorithm for testing the compatibility of phylogenies with nested taxa

JOURNAL ARTICLE published December 2017 in Algorithms for Molecular Biology

Authors: Yun Deng | David Fernández-Baca

https://doi.org/10.1186/s13015-017-0099-7 Actions

An enhanced RNA alignment benchmark for sequence alignment programs

JOURNAL ARTICLE published December 2006 in Algorithms for Molecular Biology

Authors: Andreas Wilm | Indra Mainz | Gerhard Steger

https://doi.org/10.1186/1748-7188-1-19 Actions
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