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Comprehensive microbiome causal mediation analysis using MiMed on user-friendly web interfaces

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Research funded by Korean government (2021R1C1C1013861)

Authors: Hyojung Jang | Solha Park | Hyunwook Koh

https://doi.org/10.1093/biomethods/bpad023 Actions

The effects of 105 biological, socioeconomic, behavioral, and environmental factors on the risk of SARS-CoV-2 infection and a severe course of COVID-19: a prospective, explorative cohort study

JOURNAL ARTICLE published 10 January 2022 in Biology Methods and Protocols

Research funded by Czech Science Foundation (22-20785S)

Authors: Jaroslav Flegr | Pavel Flegr | Lenka Příplatová

https://doi.org/10.1093/biomethods/bpac030 Actions

Easing diagnosis and pushing the detection limits of SARS-CoV-2

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Authors: Uday Kiran | C G Gokulan | Santosh Kumar Kuncha | Dhiviya Vedagiri | Bingi Thrilok Chander | Aedula Vinaya Sekhar | Suchitra Dontamala | Arakatla Lohith Reddy | Karthik Bharadwaj Tallapaka | Rakesh K Mishra | Krishnan Harinivas Harshan

https://doi.org/10.1093/biomethods/bpaa017 Actions

Development of a highly sensitive TaqMan method based on multi-probe strategy: its application in ASFV detection

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Research funded by National Natural Science Foundation of China (U21A20256) | Key R & D Program Projects in Zhejiang Province (2020C02013) | Zhejiang University (SJS201811)

Authors: Shuxiang Ding | Tianren Shen | Zixuan Feng | Sujing Diao | Yan Yan | Zhenkun Du | Yulan Jin | Jinyan Gu | Jiyong Zhou | Min Liao | Weiren Dong

https://doi.org/10.1093/biomethods/bpae011 Actions

Optimized protocol for shotgun label-free proteomic analysis of pancreatic islets

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Authors: Juliana SanchesTrevizol | Aline Dionizio | Aislan Quintiliano Delgado | Talita Mendes Oliveira Ventura | Caroline Fernanda da Silva Ribeiro | Nathalia Rabelo Buzalaf | José Roberto Bosqueiro | Marília Afonso Rabelo Buzalaf

https://doi.org/10.1093/biomethods/bpae003 Actions

ACValidator: A novel assembly-based approach for in silico verification of circular RNAs

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Research funded by Department of Health Services (DHS) and the State of Arizona (ADHS14-052688) | National Institute on Aging of the National Institutes of Health (P30AG019610)

Authors: Shobana Sekar | Philipp Geiger | Jonathan Adkins | Erica Tassone | Geidy Serrano | Thomas G Beach | Winnie S Liang

https://doi.org/10.1093/biomethods/bpaa010 Actions

Pharmacophore-driven identification of N-methyl-D-receptor antagonists as potent neuroprotective agents validated using in vivo studies

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Authors: Mukta Sharma | Anupama Mittal | Aarti Singh | Ashwin K Jainarayanan | Swapnil Sharma | Sarvesh Paliwal

https://doi.org/10.1093/biomethods/bpaa013 Actions

Efficient regeneration of protoplasts from Solanum lycopersicum cultivar Micro-Tom

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Research funded by Samsung Science and Technology Foundation (SSTF-BA2001-10)

Authors: Yeong Yeop Jeong | Yoo-Sun Noh | Suk Weon Kim | Pil Joon Seo

https://doi.org/10.1093/biomethods/bpae008 Actions

A semi-automated spectral approach to analyzing cyclical growth patterns using fish scales

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Authors: Julien A Chaput | Gérald Chaput

https://doi.org/10.1093/biomethods/bpae018 Actions

Correction to: An improved method for measuring catalase activity in biological samples

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

https://doi.org/10.1093/biomethods/bpae025 Actions

Multiparameter flow cytometric detection and analysis of rare cells in in vivo models of cancer metastasis

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Research funded by National Cancer Institute (U54CA143803,CA163124,CA093900,CA143055)

Authors: Mikaela M Mallin | Louis T A Rolle | Kenneth J Pienta | Sarah R Amend

https://doi.org/10.1093/biomethods/bpae026 Actions

Exposing and exploiting host–parasite arms race clues in SARS-CoV-2: a principally new method for improved T cell immunogenicity prediction

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Research funded by Czech Science Foundation (22-20785S)

Authors: Jaroslav Flegr | Ivana Králová Lesná | Daniel Zahradník

https://doi.org/10.1093/biomethods/bpad011 Actions

Erratum to: Rapid, modular, and cost-effective generation of donor DNA constructs for CRISPR-based gene knock-in

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Authors: Yi-Jiun Chen | Ya-Yun Cheng | Weikang Wang | Xiao-Jun Tian | Daniel E Lefever | David A Taft | Jingyu Zhang | Jianhua Xing

https://doi.org/10.1093/biomethods/bpaa021 Actions

UCP-LF and other assay methods for schistosome circulating anodic antigen between 1978 and 2022

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Authors: Ilemobayo Victor Fasogbon | Patrick Maduabuchi Aja | Erick Nyakundi Ondari | Ismail Adebayo | Olukayode Adebola Ibitoye | Moses Egesa | Deusdedit Tusubira | Swamiappan Sasikumar | Hope Onohuean

https://doi.org/10.1093/biomethods/bpad006 Actions

RNA profile diversity across arthropoda: guidelines, methodological artifacts, and expected outcomes

JOURNAL ARTICLE published 1 January 2018 in Biology Methods and Protocols

Research funded by Division of Environmental Biology Bioluminescence and Vision (1556059) | NSF (1701835)

Authors: Danielle M DeLeo | Jorge L Pérez-Moreno | Hernán Vázquez-Miranda | Heather D Bracken-Grissom

https://doi.org/10.1093/biomethods/bpy012 Actions

EpiHRMAssay, in tube and in silico combined approach for the scanning and epityping of heterogeneous DNA methylation

JOURNAL ARTICLE published 1 January 2017 in Biology Methods and Protocols

Authors: Marco Cirilli | Ines Delfino | Emilia Caboni | Rosario Muleo

https://doi.org/10.1093/biomethods/bpw008 Actions

Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases

JOURNAL ARTICLE published 10 January 2022 in Biology Methods and Protocols

Research funded by Florida Department of Environmental Protection (20ESGEMN00001CA to C.A.K.,B3B171 to V.J.P.,B7C0F5 to V.J.P.)

Authors: James S Evans | Valerie J Paul | Blake Ushijima | Christina A Kellogg

https://doi.org/10.1093/biomethods/bpac007 Actions

Positive/negative ion-switching-based LC–MS/MS method for quantification of cytosine derivatives produced by the TET-family 5-methylcytosine dioxygenases

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Research funded by US Department of Defense (W81XWH-13-1-0174) | NIH (R15-GM126502-01A1)

Authors: Aninda Sundar Dey | Navid J Ayon | Chayan Bhattacharya | William G Gutheil | Mridul Mukherji

https://doi.org/10.1093/biomethods/bpaa019 Actions

An accurate spectrophotometric method for chitosan quantification

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Research funded by National Council of Science and Technology of Mexico (CF-23-G-192)

Authors: Oscar González-Davis | Itandehui Betanzo | Rafael Vazquez-Duhalt

https://doi.org/10.1093/biomethods/bpad036 Actions

Practical genotyping by single-nucleotide primer extension

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Authors: Joan P Breyer | Jeffrey R Smith

https://doi.org/10.1093/biomethods/bpaa002 Actions
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