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Distinct coral environments shape the dynamic of planktonic Vibrio spp.

JOURNAL ARTICLE published 23 October 2023 in Environmental Microbiome

Research funded by National Natural Science Foundation of China (42006085) | Marine S&T Fund of Fujian Province (2021J05094) | Fund of Key Laboratory of Marine Ecological Conservation and Restoration, Ministry of Natural Resources/ Fujian Provincial Key Laboratory of Marine Ecological Conservation and Restoration (EPR2023001) | Fundamental Research Funds for the Central Universities (202312034) | Scientific Research Foundation of the Third Institute of Oceanography, MNR (2020005)

Authors: Wenbin Zhao | Xing Chen | Ronghua Liu | Peng Tian | Wentao Niu | Xiao-Hua Zhang | Jiwen Liu | Xiaolei Wang

What matters most? Assessment of within-canopy factors influencing the needle microbiome of the model conifer, Pinus radiata

JOURNAL ARTICLE published 30 May 2023 in Environmental Microbiome

Research funded by Ministry of Business, Innovation and Employment (The Tree Microbiome Project: at the root of climate proofing forests (C04X2002))

Authors: Sarah Addison | Charlotte Armstrong | Kathryn Wigley | Robin Hartley | Steven Wakelin

DNA from non-viable bacteria biases diversity estimates in the corals Acropora loripes and Pocillopora acuta

JOURNAL ARTICLE published 8 December 2023 in Environmental Microbiome

Research funded by University of Melbourne (2022ECR096) | Australian Research Council (DP210100630,DP210100630)

Authors: Ashley M. Dungan | Laura Geissler | Amanda S. Williams | Cecilie Ravn Gotze | Emily C. Flynn | Linda L. Blackall | Madeleine J. H. van Oppen

Exploring virus-host-environment interactions in a chemotrophic-based underground estuary

JOURNAL ARTICLE published 30 January 2024 in Environmental Microbiome

Research funded by Australian Resuscitation Council (FL140100021)

Authors: Timothy M. Ghaly | Amaranta Focardi | Liam D. H. Elbourne | Brodie Sutcliffe | William F. Humphreys | Paul R. Jaschke | Sasha G. Tetu | Ian T. Paulsen

Meeting report of the sixth annual tri-service microbiome consortium symposium

JOURNAL ARTICLE published 2 August 2023 in Environmental Microbiome

Authors: Ida G. Pantoja-Feliciano De Goodfellow | Richard Agans | Robyn Barbato | Sophie Colston | Michael S. Goodson | Rasha Hammamieh | Kristy Hentchel | Robert Jones | J. Philip Karl | Robert Kokoska | Dagmar H. Leary | Camilla Mauzy | Kenneth Racicot | Blake W. Stamps | Vanessa Varaljay | Jason W. Soares

Regional biogeography versus intra-annual dynamics of the root and soil microbiome

JOURNAL ARTICLE published 7 June 2023 in Environmental Microbiome

Research funded by U.S. Department of Energy (DE-SC0014108,DE-SC0018409,DE-SC0018409,DE-SC0018409,DE-SC0014108,DE-SC0014108,DE-SC0014108) | U.S. National Science Foundation (DEB 1832042,DEB 1832042)

Authors: Lukas P. Bell-Dereske | Gian Maria Niccolò Benucci | Pedro Beschoren da Costa | Gregory Bonito | Maren L. Friesen | Lisa K. Tiemann | Sarah E. Evans

Microbial life in 25-m-deep boreholes in ancient permafrost illuminated by metagenomics

JOURNAL ARTICLE published 13 April 2023 in Environmental Microbiome

Authors: Xiaofen Wu | Abraham L. Almatari | Wyatt A. Cyr | Daniel E. Williams | Susan M. Pfiffner | Elizaveta M. Rivkina | Karen G. Lloyd | Tatiana A. Vishnivetskaya

A coral-associated actinobacterium mitigates coral bleaching under heat stress

JOURNAL ARTICLE published 23 November 2023 in Environmental Microbiome

Research funded by National Natural Science Foundation of China (42122045,41890853) | K. C. Wong Education Foundation (GJTD-2020-12)

Authors: Jie Li | Yiyang Zou | Qiqi Li | Jian Zhang | David G. Bourne | Yuanjiao Lyu | Cong Liu | Si Zhang

Characterization of the microbiome associated with in situ earthen materials

JOURNAL ARTICLE published December 2020 in Environmental Microbiome

Research funded by Agence Nationale de la Recherche (BIOTERRA - ANR - 13 - VBDU - 0005)

Authors: Alexis Simons | Alexandra Bertron | Jean-Emmanuel Aubert | Christophe Roux | Christine Roques

Correction: Habitat type and host grazing regimen influence the soil microbial diversity and communities within potential biting midge larval habitats

JOURNAL ARTICLE published 28 February 2023 in Environmental Microbiome

Authors: Saraswoti Neupane | Travis Davis | Dana Nayduch | Bethany L. McGregor

Pitting the olive seed microbiome

JOURNAL ARTICLE published 15 March 2024 in Environmental Microbiome

Authors: Nuria M. Wentzien | Antonio J. Fernández-González | Antonio Valverde-Corredor | Ana V. Lasa | Pablo J. Villadas | Wisnu Adi Wicaksono | Tomislav Cernava | Gabriele Berg | Manuel Fernández-López | Jesús Mercado-Blanco

Author Correction: Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom

JOURNAL ARTICLE published 30 March 2023 in Environmental Microbiome

Authors: Srijak Bhatnagar | Elise S. Cowley | Sebastian H. Kopf | Sherlynette Pérez Castro | Sean Kearney | Scott C. Dawson | Kurt Hanselmann | S. Emil Ruff

Subtropical coastal microbiome variations due to massive river runoff after a cyclonic event

JOURNAL ARTICLE published 30 January 2024 in Environmental Microbiome

Authors: M. Meyneng | H. Lemonnier | R. Le Gendre | G. Plougoulen | F. Antypas | D. Ansquer | J. Serghine | S. Schmitt | R. Siano

Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes

JOURNAL ARTICLE published 16 June 2023 in Environmental Microbiome

Research funded by Swiss Federal Institute for Forest, Snow and Landscape Research (Metagenomics 5233.00388.001.01) | Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (IZLSZ2_170941) | Swiss Polar Institute (Polar Access Fund)

Authors: Ciro Sannino | Weihong Qi | Joel Rüthi | Beat Stierli | Beat Frey

New insight into the bark beetle ips typographus bacteriome reveals unexplored diversity potentially beneficial to the host

JOURNAL ARTICLE published 9 June 2023 in Environmental Microbiome

Research funded by Grantová Agentura České Republiky (19-09072S)

Authors: Ezequiel Peral-Aranega | Zaki Saati-Santamaría | Miguel Ayuso-Calles | Martin Kostovčík | Tereza Veselská | Karel Švec | Raúl Rivas | Miroslav Kolařik | Paula García-Fraile

A symbiotic footprint in the plant root microbiome

JOURNAL ARTICLE published 31 July 2023 in Environmental Microbiome

Authors: Kyle Hartman | Marc W. Schmid | Natacha Bodenhausen | S. Franz Bender | Alain Y. Valzano-Held | Klaus Schlaeppi | Marcel G.A. van der Heijden

specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data

JOURNAL ARTICLE published December 2022 in Environmental Microbiome

Research funded by National Institutes of Health (5 T15 LM009451-12) | National Science Foundation (1255972)

Authors: John L. Darcy | Anthony S. Amend | Sean O. I. Swift | Pacifica S. Sommers | Catherine A. Lozupone

Distinctive signatures of pathogenic and antibiotic resistant potentials in the hadal microbiome

JOURNAL ARTICLE published December 2022 in Environmental Microbiome

Research funded by national key research and development program of china (2018YFE0110500) | national natural science foundation of china (51908467,31970129,31800128) | natural science foundation of zhejiang province (LR20C010001)

Authors: Liuqing He | Xinyu Huang | Guoqing Zhang | Ling Yuan | Enhui Shen | Lu Zhang | Xiao-Hua Zhang | Tong Zhang | Liang Tao | Feng Ju

Reciprocal influence of soil, phyllosphere, and aphid microbiomes

JOURNAL ARTICLE published 21 July 2023 in Environmental Microbiome

Research funded by Vetenskapsrådet (2021-03784) | H2020 Marie Skłodowska-Curie Actions (844114)

Authors: Adrian Wolfgang | Ayco J. M. Tack | Gabriele Berg | Ahmed Abdelfattah

Elucidating the effects of organic vs. conventional cropping practice and rhizobia inoculation on rhizosphere microbial diversity and yield of peanut

JOURNAL ARTICLE published 18 July 2023 in Environmental Microbiome

Research funded by Southern SARE (GS18-195,GS18-195)

Authors: Dev Paudel | Liping Wang | Ravin Poudel | Janam P Acharya | Samantha Victores | Cleber Henrique Lopes de Souza | Esteban Rios | Jianping Wang